Laboratory Medicine ›› 2021, Vol. 36 ›› Issue (12): 1277-1282.DOI: 10.3969/j.issn.1673-8640.2021.012.017
Previous Articles Next Articles
WU Xinxin1, HAN Mingyue1, YU Daojun2()
Received:
2020-08-04
Online:
2021-12-30
Published:
2021-12-29
Contact:
YU Daojun
CLC Number:
WU Xinxin, HAN Mingyue, YU Daojun. Research progress and application of RNase H-dependent PCR technology[J]. Laboratory Medicine, 2021, 36(12): 1277-1282.
Add to citation manager EndNote|Ris|BibTeX
URL: https://www.shjyyx.com/EN/10.3969/j.issn.1673-8640.2021.012.017
[1] | GHANNAM M G, VARACALLO M. Biochemistry,polymerase chain reaction[EB/OL]. (2018-12-22)[2020-05-27]. https://www.ncbi.nlm.nih.gov/pubmed/30571074. |
[2] |
DOBOSY J R, ROSE S D, BELTZ K R, et al. RNase H-dependent PCR(rhPCR):improved specificity and single nucleotide polymorphism detection using blocked cleavable primers[J]. BMC Biotechnol, 2011, 11:80.
DOI URL |
[3] |
AO W, ALDOUS S, WOODRUFF E, et al. Rapid detection of rpoB gene mutations conferring rifampin resistance in Mycobacterium tuberculosis[J]. J Clin Microbiol, 2012, 50(7):2433-2440.
DOI URL |
[4] |
CRISSMAN J, LIN Y, SEPARA K, et al. RNase H-dependent PCR enables highly specific amplification of antibody variable domains from single B-cells[J]. PLoS One, 2020, 15(11):e0241803.
DOI URL |
[5] |
BROCCANELLO C, CHIODI C, FUNK A, et al. Comparison of three PCR-based assays for SNP genotyping in plants[J]. Plant Methods, 2018, 14:28.
DOI URL |
[6] |
KIM S, MISRA A. SNP genotyping:technologies and biomedical applications[J]. Annu Rev Biomed Eng, 2007, 9:289-320.
DOI URL |
[7] |
CERRITELLI S M, CROUCH R J. Ribonuclease H:the enzymes in eukaryotes[J]. FEBS J, 2009, 276(6):1494-1505.
DOI URL |
[8] |
LE LAZ S, LE GOAZIOU A, HENNEKE G. Structure-specific nuclease activities of Pyrococcus abyssi RNase HII[J]. J Bacteriol, 2010, 192(14):3689-3698.
DOI URL |
[9] |
RYDBERG B, GAME J. Excision of misincorporated ribonucleotides in DNA by RNase H(type 2)and FEN-1 in cell-free extracts[J]. Proc Natl Acad Sci U S A, 2002, 99(26):16654-16659.
DOI URL |
[10] |
SHABAN N M, HARVEY S, PERRINO F W, et al. The structure of the mammalian RNase H2 complex provides insight into RNA·DNA hybrid processing to prevent immune dysfunction[J]. J Biol Chem, 2010, 285(6):3617-3624.
DOI URL |
[11] |
HICKE B, PASKO C, GROVES B, et al. Automated detection of toxigenic Clostridium difficile in clinical samples:isothermal tcdB amplification coupled to array-based detection[J]. J Clin Microbiol, 2012, 50(18):2681-2687.
DOI URL |
[12] | HYJEK M, FIGIEL M, NOWOTNY M. RNases H:structure and mechanism[J]. DNA Repair(Amst), 2019, 84:102672. |
[13] |
KERMEKCHIEV M B, TZEKOV A, BARNES W M. Cold-sensitive mutants of Taq DNA polymerase provide a hot start for PCR[J]. Nucleic Acids Res, 2003, 31(21):6139-6147.
DOI URL |
[14] |
DON R H, COX P T, WAINWRIGHT B J, et al. 'Touchdown' PCR to circumvent spurious priming during gene amplification[J]. Nucleic Acids Res, 1991, 19(14):4008.
DOI URL |
[15] |
BROWNIE J, SHAWCROSS S, THEAKER J, et al. The elimination of primer-dimer accumulation in PCR[J]. Nucleic Acids Res, 1997, 25(16):3235-3241.
DOI URL |
[16] |
LABBÉ G, RANKIN M A, ROBERTSON J, et al. Targeting discriminatory SNPs in Salmonella enterica serovar Heidelberg genomes using RNase H2-dependent PCR[J]. J Microbiol Methods, 2019, 157:81-87.
DOI URL |
[17] |
JACROUX T, RIECK D C, CUI R, et al. Enzymatic amplification of DNA/RNA hybrid molecular beacon signaling in nucleic acid detection[J]. Anal Biochem, 2013, 432(2):106-114.
DOI URL |
[18] | 盛艳敏, 杨燕平, 吴英杰, 等. 应用于PCR技术的DNA聚合酶[J]. 长春师范学院学报(自然科学版), 2008, 27(6):67-70. |
[19] |
OLSZEWSKI M, PIBIDA M, BILEK M, et al. Fusion of Taq DNA polymerase with single-stranded DNA binding-like protein of Nanoarchaeum equitans-expression and characterization[J]. PLoS One, 2017, 12(9):e0184162.
DOI URL |
[20] |
KÄHLER M, ANTRANIKIAN G. Cloning and characterization of a family B DNA polymerase from the hyperthermophilic crenarchaeon Pyrobaculum islandicum[J]. J Bacteriol, 2000, 182(3):655-663.
DOI URL |
[21] | VON WINTZINGERODE F, GÖBEL U B, STACKEBRANDT E. Determination of microbial diversity in environmental samples:pitfalls of PCR-based rRNA analysis[J]. FEMS Microbiol Rev, 1997, 21(3):213-229. |
[22] |
BOUCARD A A, MAXEINER S, SÜDHOF T C. Latrophilins function as heterophilic cell-adhesion molecules by binding to teneurins:regulation by alternative splicing[J]. J Biol Chem, 2014, 289(1):387-402.
DOI URL |
[23] | M D 史密斯, R J 波特, G 德哈列沃, 等. 热稳定逆转录酶及其用途:CN1430670[P]. 2001-05-25. |
[24] |
YASUKAWA K, NEMOTO D, INOUYE K. Comparison of the thermal stabilities of reverse transcriptases from avian myeloblastosis virus and moloney murine leukaemia virus[J]. J Biochem, 2008, 143(2):261-268.
DOI URL |
[25] |
KONISHI A, NEMOTO D, YASUKAWA K, et al. Comparison of the thermal stabilities of the αβ heterodimer and the α subunit of avian myeloblastosis virus reverse transcriptase[J]. Biosci Biotechnol Biochem, 2011, 75(8):1618-1620.
DOI URL |
[26] | YASUKAWA K, YANAGIHARA I, FUJIWARA S. Alteration of enzymes and their application to nucleic acid amplification(review)[J]. Int J Mol Med, 2020, 46(5):1633-1643. |
[27] | 张翠, 刘亚民, 张忠玲, 等. Taq DNA聚合酶及镁离子浓度对PCR扩增产率的影响[J]. 国外医学临床生物化学与检验学分册, 2003, 24(4):236. |
[28] |
LAI B, LI Y, CAO A, et al. Metal ion binding and enzymatic mechanism of Methanococcus jannaschii RNase HII[J]. Biochemistry, 2003, 42(3):785-791.
DOI URL |
[29] |
NOTOMI T, OKAYAMA H, MASUBUCHI H, et al. Loop-mediated isothermal amplification of DNA[J]. Nucleic Acids Res, 2000, 28(12):E63.
DOI URL |
[30] |
DING S, CHEN R, CHEN G, et al. One-step colorimetric genotyping of single nucleotide polymorphism using probe-enhanced loop-mediated isothermal amplification(PE-LAMP)[J]. Theranostics, 2019, 9(13):3723-3731.
DOI URL |
[31] | 杨卓. LAMP研究中的常见问题分析及解决方法[J]. 现代畜牧兽医, 2016,(7):53-57. |
[32] | GILL P, HADIAN AMREE A. AS-LAMP:a new and alternative method for genotyping[J]. Avicenna J Med Biotechnol, 2020, 12(1):2-8. |
[33] |
BELTZ K, TSANG D, WANG J, et al. A high-performing and cost-effective SNP genotyping method using rhPCR and universal reporters[J]. Advances in Bioscience and Biotechnology, 2018, 9(9):497-512.
DOI URL |
[34] |
MAXAM A M, GILBERT W. A new method for sequencing DNA[J]. Proc Natl Acad Sci U S A, 1977, 74(2):560-564.
DOI URL |
[35] |
WANG L, SADRI M, GIRAUD D, et al. RNase H2-dependent polymerase chain reaction and elimination of confounders in sample collection,storage,and analysis strengthen evidence that microRNAs in bovine milk are bioavailable in humans[J]. J Nutr, 2018, 148(1):153-159.
DOI URL |
[36] |
LI S, SUN J, ALLESØE R, et al. RNase H-dependent PCR-enabled T-cell receptor sequencing for highly specific and efficient targeted sequencing of T-cell receptor mRNA for single-cell and repertoire analysis[J]. Nat Protoc, 2019, 14(8):2571-2594.
DOI URL |
[37] | CAHOON A B, NAUSS J A, STANLEY C D, et al. Deep transcriptome sequencing of two green algae,Chara vulgaris and Chlamydomonas reinhardtii,provides no evidence of organellar RNA editing[J]. Genes(Basel), 2017, 8(2):80. |
[38] |
ZUZAK K, YANG Y L, KIMMEL N, et al. Identification of native and invasive subspecies of common reed(Phragmites australis) in Alberta,Canada,by RNase-H-dependent PCR[J]. Botany, 2018, 96:145-150.
DOI URL |
[39] |
MCALLISTER C H, FORTIER C E, ST ONGE K R, et al. A novel application of RNase H2-dependent quantitative PCR for detection and quantification of Grosmannia clavigera,a mountain pine beetle fungal symbiont,in environmental samples[J]. Tree Physiol, 2018, 38(3):485-501.
DOI URL |
[40] |
RODGERS T W, OLSON J R, MOCK K E. Use of RNase H-dependent PCR for discrimination and detection of closely related species from environmental DNA[J]. Methods in Ecology and Evolution, 2019, 10(7):1091-1096.
DOI URL |
[1] | FAN Lieying. Research status and application prospects of biomarkers for membranous nephropathy [J]. Laboratory Medicine, 2023, 38(12): 1111-1114. |
[2] | SUN Lincheng, LI Jianfeng, CHENG Weili, JI Panyun. Roles of anti-PLA2R IgG4 antibody and PLA2R IgG4/IgG ratio in primary membranous nephropathy [J]. Laboratory Medicine, 2023, 38(12): 1115-1120. |
[3] | LIU Qingyang, YUAN Jianming, XIA Jinjun, JIANG Fengying, WANG Qiubo, WANG Xiaoming. CXCL9 as a potential diagnostic marker of rheumatoid arthritis based on GEO database and experimental verification [J]. Laboratory Medicine, 2023, 38(12): 1121-1129. |
[4] | YANG Xiao, LI Enling, WU Lixia, DAI Yingxin, WANG Zhiqing, HUANG Hao, ZHENG Bing. Influence of cytoplasmic antinuclear antibody on indirect immunofluorescence assay based antineutrophil cytoplasmic antibody determination [J]. Laboratory Medicine, 2023, 38(12): 1135-1140. |
[5] | XIANG Jin, LIU Aiping, HU Yao, WU Zhiyuan, CAO Guojun, GUAN Ming. ANA profiles in COVID-19 patients and influence of serum heat-inactivation on ANA determination [J]. Laboratory Medicine, 2023, 38(12): 1141-1146. |
[6] | CHENG Yu, XU Zhen, LU Liu, DING Menglei, YU Shanshan, ZONG Ming, FAN Lieying. Expression and risk factors of anti-ACE-2 antibody in serum of patients with COVID-19 [J]. Laboratory Medicine, 2023, 38(12): 1147-1152. |
[7] | . [J]. Laboratory Medicine, 2023, 38(12): 1153-1156. |
[8] | . [J]. Laboratory Medicine, 2023, 38(12): 1157-1159. |
[9] | WANG Hongling, LIU Mengna, BAI Ping, LIAO Huanjin. Risk factors of relapse following allogeneic hematopoietic stem cell transplantation in patients with acute myeloid leukemia [J]. Laboratory Medicine, 2023, 38(12): 1160-1166. |
[10] | YANG Xilan, WANG Jinyu, LIU Shuyu, ZHAN Yiyang, LIU Jing, JIA Jian. Correlation between hyperlipidemia and endothelial microparticles in elderly patients from Gulou Community in Nanjing [J]. Laboratory Medicine, 2023, 38(12): 1167-1172. |
[11] | DAI Fangfang, LU Xinxin, YU Yanhua, CHEN Ming, SUN Guizhen. Analysis of Mycobacterium infection in HIV/AIDS patients [J]. Laboratory Medicine, 2023, 38(12): 1173-1176. |
[12] | GU Yu, LIANG Xiaoyan, MA Shenghui, TONG Na, CHENG Mingyan, YAN Zejun. Expression and near-term prognostic predictive value of plasma biomarkers in chronic kidney disease patients with thromboembolism [J]. Laboratory Medicine, 2023, 38(12): 1177-1182. |
[13] | . [J]. Laboratory Medicine, 2023, 38(12): 1183-1185. |
[14] | . [J]. Laboratory Medicine, 2023, 38(12): 1186-1190. |
[15] | . [J]. Laboratory Medicine, 2023, 38(12): 1191-1194. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||