Objective To investigate the relationship between serum free fatty acid (FFA)and non-insulin-dependent diabetes mellitus (NIDDM) metabolic disorder. Methods A total of 625 patients with NIDDM and 283 healthy subjects were enrolled,and serum FFA,total cholesterol (TC),triglyceride (TG),high-density lipoprotein cholesterol (HDL-C),low-density lipoprotein cholesterol (LDL-C),apolipoprotein (apo) A1,apo B100,lipoprotein [Lp(a)],homocysteine (Hcy),glucose(Glu),glycated hemoglobin A1c(HbA1c),uric acid(UA),creatinine(Cr),urea,cystatin C(Cys C)and alanine aminotransferase(ALT) were determined. NIDDM patients were classified into new-diagnosed NIDDM group(47 cases),stable group(545 cases) and unstable group (33 cases). Results There was statistical significance for these parameters between newly-diagnosed NIDDM and healthy control groups (P<0.05). There was statistical significance for FFA,Lp(a),apo A1,apo B100,LDL-C,HDL-C,Glu,ALT,HbA1c and UA between unstable and healthy control groups (P<0.01). There was statistical significance for HDL-C,apo A1,LDL-C,apo B100,FFA,Lp(a),Glu,ALT,HbA1c and UA between stable and healthy control groups(P<0.05),and there was no statistical significance for other parameters compared with healthy control group (P>0.05). Conclusions The levels of FFA and blood lipid in NIDDM patients have a correlation with metabolic disorder.